Skip to content

nativeSpecification does not accept mem unit #84

@marcelzwiers

Description

@marcelzwiers

I'm using drmaa-python to run jobs on our slurm cluster and all works fine if I use:

jt.nativeSpecification = "--mem=4000"

Which I believe is interpreted as 4000 mb (default). However, if I specify the unit I get an error:

jt.nativeSpecification = "--mem=4G"
  File "/opt/bidscoin/lib/python3.10/site-packages/drmaa/session.py", line 314, in runJob
    c(drmaa_run_job, jid, sizeof(jid), jobTemplate)
  File "/opt/bidscoin/lib/python3.10/site-packages/drmaa/helpers.py", line 302, in c
    return f(*(args + (error_buffer, sizeof(error_buffer))))
  File "/opt/bidscoin/lib/python3.10/site-packages/drmaa/errors.py", line 151, in error_check
    raise _ERRORS[code - 1](error_string)
drmaa.errors.InvalidArgumentException: code 4: not an number: 4G

Using sbatch --mem=4G directly works just fine, so the syntax looks fine to me. I may have done something wrong, but I can't figure out how to specify mem in GB...?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions