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@SlavovLab

Slavov Laboratory

We study post-transcriptional regulation at single-cell resolution using https://proteomics.single-cell.net Videos: https://youtube.slavovlab.net

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  1. DO-MS DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    R 27 10

  2. DART-ID DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 18 4

  3. HIquant HIquant Public

    Forked from nslavov/HIquant

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 3 1

  4. tissue-ptr tissue-ptr Public

    Forked from afranks86/tissue-ptr

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 4

Repositories

Showing 10 of 29 repositories
  • early-stage-embryos Public

    Here you will find scripts and related files that are behind analyses presented in "Proteome asymmetry in mouse & human embryos before fate specification"".

    SlavovLab/early-stage-embryos’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 29, 2025
  • sc_metabolic_pulse Public

    Analysis of protein synthesis and degradation in single cell cells based on in vivo metabolic pulse with stable heavy isotopes

    SlavovLab/sc_metabolic_pulse’s past year of commit activity
    R 2 0 0 0 Updated Nov 17, 2025
  • decode Public

    Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

    SlavovLab/decode’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 23, 2025
  • QuantQC Public

    QuantQC is a package for quality control (QC) of single-cell proteomics data. It is optimized to work with nPOP, a method for massively parallel sample preparation on glass slides.

    SlavovLab/QuantQC’s past year of commit activity
    HTML 6 2 2 0 Updated Jul 22, 2025
  • Protein-Clearance Public

    Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes

    SlavovLab/Protein-Clearance’s past year of commit activity
    R 2 0 0 0 Updated May 4, 2025
  • SCoPE2 Public
    SlavovLab/SCoPE2’s past year of commit activity
    R 18 6 1 11 Updated Apr 17, 2025
  • DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    SlavovLab/DO-MS’s past year of commit activity
    R 27 MIT 10 5 12 Updated Mar 17, 2025
  • plexDIA Public

    Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.

    SlavovLab/plexDIA’s past year of commit activity
    R 12 2 0 0 Updated Mar 17, 2025
  • DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    SlavovLab/DART-ID’s past year of commit activity
    Python 18 MIT 4 4 4 Updated Mar 17, 2025
  • CellPermeability Public

    Cell Permeability analysis

    SlavovLab/CellPermeability’s past year of commit activity
    R 3 0 2 0 Updated Dec 18, 2024
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