Search results

Is this pipeline actively maintained?

Status: Open.

#53 In saeyslab/SCIP;

· tatyana-perlova opened on Jan 19, 2024

Use pre-commit package for enforcement

Status: Open.

#50 In saeyslab/SCIP;

· MaximLippeveld opened on Jul 5, 2022

Specify different memory requirements for GPU workers in mpi mode

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In saeyslab/SCIP;

· MaximLippeveld opened on Mar 3, 2022

Implement possibility to refine masks after CellPose segmentation

segmentationRelating to segmentationRelating to segmentation

Status: Open.

#47 In saeyslab/SCIP;

· MaximLippeveld opened on Feb 3, 2022

Switch to tifffile in multiframe tiff loader

data-loadingRelating to data loadingRelating to data loading

Status: Open.

#44 In saeyslab/SCIP;

· MaximLippeveld opened on Nov 1, 2021

·  

BII 2021

Add fluorescence intensity quality control plots to spot batch effects

preprocessingSteps between raw data loading and segmentation.Steps between raw data loading and segmentation.

Status: Open.

#35 In saeyslab/SCIP;

· MaximLippeveld opened on Aug 26, 2021

Compute CP MeasureImageQuality features to filter out abberant images prior to full computation

preprocessingSteps between raw data loading and segmentation.Steps between raw data loading and segmentation.

Status: Open.

#34 In saeyslab/SCIP;

· MaximLippeveld opened on Aug 25, 2021

Compute quantiles with random undersampling

preprocessingSteps between raw data loading and segmentation.Steps between raw data loading and segmentation.

Status: Open.

#27 In saeyslab/SCIP;

· MaximLippeveld opened on Aug 24, 2021

·  

BII 2021

Add per-image min-max normalization

preprocessingSteps between raw data loading and segmentation.Steps between raw data loading and segmentation.

Status: Open.

#26 In saeyslab/SCIP;

· MaximLippeveld opened on Aug 24, 2021

·  

BII 2021

Implement principal feature analysis

enhancementNew feature or requestNew feature or request

image-featuresRelating to image featuresRelating to image features

Status: Open.

#13 In saeyslab/SCIP;

· MaximLippeveld opened on Jul 15, 2021

Implement feature extraction that combines channels

enhancementNew feature or requestNew feature or request

image-featuresRelating to image featuresRelating to image features

Status: Open.

#12 In saeyslab/SCIP;

· MaximLippeveld opened on Jul 15, 2021

·  

BII 2021

Feature extraction from pretrained neural nets

enhancementNew feature or requestNew feature or request

image-featuresRelating to image featuresRelating to image features

Status: Open.

#8 In saeyslab/SCIP;

· MaximLippeveld opened on Jul 15, 2021